During the remainder of his life little or nothing of any importance is known of him, except that he lived in the favour and merited smiles of his sovereign, in the undisputed possession and enjoyment of the extensive estates and honours of his noble ancestors, which, through his faithful adherence to the House of Stuart, had been nearly lost during the exile of the second Charles and his own captivity. Referring to the position of affairs at this period, the Laird of Applecross says that the "rebels, possessing the authority, oppressed all the loyal subjects, and him with the first; his estate was over-burthened to its destruction, but nothing could deter him so as to bring him to forsake his King or his duty. Whenever any was in the field for him, he was one, seconding that falling cause with all his power, and when he was not in the field against the enemy, he was in the prison by him until the restoration of the King." Restored to liberty, he, on the 23d of April, 1662, received a Commission of the Sheriffship of Ross, which was afterwards renewed to him and to his eldest son Kenneth, jointly, on 31st of July, 1675; and when he had set his affairs in order at Brahan, he re-visited Paris, leaving his Countess Isobel, daughter of Sir John Mackenzie of Tarbat, and sister to the first Earl of Cromarty, in charge of his interests in the North. Kenneth married early in life Isobel, daughter of Sir John Mackenzie of Tarbat, father of George, first Earl of Cromarty, with issue - I. Kenneth Og, his heir and successor. II. John Mackenzie of Assynt, who married Sibella, daughter of Alexander Mackenzie, III. of Applecross (marriage contract 1697). He has a sasine in 1695 and 1696. They had issue, an only son, Kenneth, who married his cousin Frances, daughter of Alexander Mackenzie of Assynt and Conansbay, and died in 1723, without issue. III. Hugh, who died young and unmarried. There is a sasine to him as third son in 1667. IV. Colonel Alexander, also designated of Assynt and Conansbay. He has a sasine as "third lawful son now in life" of the lands of Kildin, dated October, 1694. He married Elizabeth, daughter of John Paterson, Bishop of Ross (marriage contract 1700), with issue - Major William Mackenzie, who married Mary, daughter and co-heiress of Mathew Humberston, county Lincoln, whose two sons - Colonel Thomas Francis Mackenzie, and Francis Humberston Mackenzie, created Lord Seaforth in 1797, and who died without surviving male issue, the last of his line in 1815 - succeeded to the family estates. V. Margaret, who married James, second Lord Duffus, with issue. VI. Anne, who died unmarried. VII. Isabel, who married, first, in February, 1694, Roderick Macleod, XVI I. of Macleod, without issue; and, secondly, Sir Duncan Campbell of Lochnell, with issue.