Jefferson, Thomas, his second inauguration, i. 1; his Inaugural Address, 1-9; his Cabinet, 10; result of his Spanish diplomacy, 38, 39; his letter to Madison respecting Monroe’s mission, 54; his letter to James Bowdoin respecting the Spanish relations, 57; writes to Madison respecting procedure with Spain, 61; suggests a treaty with England, 63; favors Armstrong’s advice to occupy Texas, 69; writes to Madison of plan for peaceable settlement by intervention of France, 75; his memorandum of a Cabinet meeting, 77; the turning-point of his second administration, 80; his conversation with Merry after the British seizures, 101; his memorandum of the new Spanish policy, 106; his aversion to war with England, 108; his Annual Message, 1805, 111 _et seq._; announces his intention to retire at the close of his term, 119; his Message applauded by the Federalist press, 129; his secret Spanish message, 130; preserves secrecy in Congress, 147; coerced into sending special mission to England, 150, 152, 433; conciliates opposition in Congress, 165; warns Monroe against Randolph, 165; makes advances to Macon, 167; Randolph’s attack on, 172 _et seq._; closes American ports to three British cruisers, 200; his character and position described by Turreau, 205; asks Bidwell to take the leadership in the House, 207; his refusal to obey a subpœna, 208, 450; receives Burr at the White House, 233; his seeming indifference to Burr’s movements, 266; his memoranda of the situation, 278; sends Graham to inquire into Burr’s movements, 281; sends to Wilkinson to use active measures, 284; issues a proclamation, 285; his letter to Secretary Smith regarding naval and military defences, 332; obliged to proceed against Burr, 336; and to defend Wilkinson, 341; his Annual Message, December, 1806, 345 _et seq._; advocates internal improvements, 346; would abolish the slave-trade, 347; signs the Act prohibiting the Slave Trade, 365; defied by Spain, 388; his instructions to Monroe and Pinkney regarding the treaty, 401 _et seq._; determined on commercial restrictions, 423; refuses to submit Monroe’s treaty to the Senate, 430 _et seq._; offers Monroe the government of Orleans Territory, 435; his letter to Bowdoin about Spanish perfidy and injustice, 436; designs to impeach Marshall, 447; his irritation with Marshall and Burr’s counsel, 450, 453; supports Wilkinson, 456; his vexation at Burr’s acquittal, 470; his proclamation on the “Chesapeake” affair, ii. 30; preparations for war, 32; his instructions to Monroe, 39; the result of his measures of peaceful coercion, 97; his genius for peace, 130; his personal friendship for Monroe, 130;