In 1554 he was made commissary general in place of Nadal, who had been summoned to Rome to assist Ignatius, now in feeble health. The appointment of Borgia to such a post was most extraordinary for the reason that he had been but such a short time in the Society, and had never been in a subordinate position. The difficulty of his task was augmented by the fact that he had been commissioned to divide the Spanish section of the Society into four distinct provinces, and to assume, in this and other matters the duties and functions of an office which had no defined limitations, and which would inevitably bring him into conflict with other superiors. As a matter of fact, the commissariate was such a clumsy contrivance that it had soon to be done away with. Araoz had previously been at odds with Nadal, but he found it still more difficult to get along with Borgia. This disedifying antagonism continued for some time, and it is said that the old worldly superiority of the viceroy showed itself occasionally in Borgia. His dictatorial methods of government, his resentment of interference with his plans, even when Nadal spoke to him, showed that he was not yet a Jesuit saint. As if he still possessed unlimited revenues he established no less than twenty new houses; and, when there were not sufficient resources to carry them on, he expected his subjects to live in a penury that was incompatible with general content and fatal to the existence of the institutions. Moreover, his old propensity for great mortifications manifested itself to such an extent that there was danger of the Jesuits under him becoming Carthusian in their mode of life. Indeed, he was of opinion that the old monastic prison and stocks should be introduced into the Society, and he sent a _postulatum_ or petition to that effect to the congregation which elected Laínez. The result was that a spirit of revolt began to manifest itself in Spain, and Nadal, who was temporarily there, was happy when recalled to Rome.