The complex sequence of scientific observations and the associated engineering functions were executed by the spacecraft under the control of an updatable program stored in the CCS by ground command. At appropriate times, the CCS issued commands to the AACS for movement of the scan platform or spacecraft maneuvers; to the FDS for changes in instrument configuration or telemetry rate; or to numerous other subsystems within the spacecraft for specific actions. The two identical (redundant) 4096-word memories within the CCS contained both fixed routines (about 2800 words) and a variable section (about 1290 words) for changing science sequencing functions. A single 1290-word science sequence load could easily generate 300 000 discrete commands, thus providing significantly more sequencing capability than would be possible through ground commands. A 1290-word sequencing load in the CCS controlled both the science and engineering functions of the spacecraft for a period lasting for ¾ day at closest approach and for up to 100 days during cruise. Each 1290-word program (or load) was built from specific science measurement units called links. Some links were used repeatedly in a looping cyclic (like a computer DO loop) to perform the same observation numerous times; other links that involved special measurement geometry or critical timing occurred only once. About 175 science links were defined for the Voyager 1 Jupiter encounter. It took almost two years to convert the desired science objectives and measurements first into links, then into a minute-by-minute timeline for the 98-day encounter period, and finally into the specific computer instructions that could be loaded into the CCS memory for that portion of the encounter time represented by a particular load. The total Voyager 1 Jupiter encounter period used eighteen sequence memory loads, supplemented by about 1000 ground commands to modify the sequences because of changing conditions or calibration requirements. For the Voyager 2 encounter, concern about the ailing spacecraft receiver limited the number of loads that could be transmitted, particularly while the spacecraft was deep within the Jovian magnetosphere, where radiation effects caused the receiver frequency to drift unpredictably. However, a careful redesign of the planned sequences permitted the accomplishment of very nearly the original set of observations even with these constraints. All three approaches were required on the Voyager craft, especially after Pioneer 10 and 11 demonstrated that the radiation at Jupiter was even more intense than had been assumed in early design studies.